Fundamental Toxicological Sciences

2024 - Vol. 11 No. 6

2024 - Vol. 11

Original Article
Application of the matrix profile algorithm for detecting abnormalities in rat electrocardiograms Vol.11, No.6, p.289-296
Yuhji Taquahashi , Ken-ich Aisaki , Koichi Morita , Kousuke Suga , Satoshi Kitajima
Released: December 11, 2024
Abstract Full Text PDF[3M]

An electrocardiogram (ECG) is useful for diagnosing heart diseases, particularly arrhythmias; however, it requires time to detect rare abnormalities that occur infrequently in normal conditions. This study aimed to detect abnormalities in the ECG by evaluating the performance of the matrix profile (MP) algorithm, which is used to detect outliers in data with repetitive patterns. Female hairless rats (HWY/Slc) were used, and all procedures were performed under isoflurane anesthesia. The tricyclic antidepressant amitriptyline hydrochloride (50 mg/kg) was administered intraperitoneally, and ECG measurements were obtained using carbon nanotube yarn as the surface electrode. The measurements were collected by an analog-to-digital converter at a sample rate of 2 kHz. Jupyter Lab 4.0.9 was used for the Python 3.9.1 script environment in the MP analysis, with the following related libraries: Numpy 1.19.5 and Pandas 1.2.1 for data processing, Matplotlib 3.3.4 for data visualization, and Matrixprofile 1.1.10 as the implementation library for the MP algorithm. A data size of 2.5 or 25 sec was applied without prior baseline adjustment, labeling, or normalization. The MP analysis did not detect abnormalities in cases with slow changes in the waveform, even when the waveforms were abnormal. However, it detected heart rate and amplitude fluctuations that rarely occurred in normal conditions. In particular, the MP analysis detected discord during a sudden change, such as a cardiac arrest. The MP algorithm showed excellent performance in terms of the time required for analysis and demonstrated the potential to detect ECG abnormalities in real-time during toxicity testing.

Original Article
Constructing a graph neural network-based artificial intelligence model to predict drug-induced phospholipidosis potential Vol.11, No.6, p.279-288
Yoshinobu Igarashi , Aki Hasegawa , Shigeyuki Matsumoto , Hiroaki Iwata , Ryosuke Kojima , Yasushi Okuno , Hiroshi Yamada
Released: November 22, 2024
Abstract Full Text PDF[1M]

Drug-induced phospholipidosis (DIPL) is linked to various toxicities, including hepatotoxicity, making it a critical screening factor in the early stages of drug discovery. Several models based on chemical structures have been constructed to predict compounds with DIPL potential. However, most of these models only classify results as inducers or non-inducers, without identifying the specific substructures responsible for positive outcomes. To address this limitation, we constructed an artificial intelligence (AI) model to predict compounds with DIPL potential and visualize structural alerts. The proposed model was constructed using kMoL, an open-source software library that employs a graph neural network approach to learn from chemical structural data. We employed the bagging method, resulting in a model with a high predictive performance. The model attained an F1 score of 0.796 on the external test set. In addition, we used the integrated gradient method to visualize the substructures that contributed to positive predictions. When applying the method to compounds that experimentally conducted structure-activity relationship investigations, the proposed AI model accurately predicted DIPL potential, demonstrating its practical utility in early-stage drug discovery. By predicting DIPL based on the chemical structure of compounds, the proposed model can aid in the screening for DIPL, potentially improving the safety profile of new drug candidates.

Original Article
Derivation of human health hazard assessment values for tetramethylammonium hydroxide (TMAH) under the Japan Chemical Substances Control Law Vol.11, No.6, p.267-278
Akira Kawashima , Kaoru Inoue , Kazuo Ushida , Kaoru Kai , Lucia Satiko Yoshida-Yamashita , Kenichi Masumura
Released: November 08, 2024
Abstract Full Text PDF[559K]

Tetramethylammonium hydroxide (TMAH) and substances that release tetramethylammonium (TMA) are classified as Priority Assessment Chemical Substances (PACSs) under registration number 17 of the Japan Chemical Substances Control Law (CSCL, 1973). This classification requires a thorough human health hazard assessment and derivation of Hazard Assessment Value (HAVs) for the oral and inhalation exposure at the Assessment II stage. We analyzed their general, developmental, reproductive toxicity, genotoxicity, and carcinogenicity using hazard data from both domestic and international risk assessment agencies and subsequently proposed an HAV. For oral exposure, a no-observed-adverse-effect-level (NOAEL) of 1 mg/kg/day, based on transient or persistent salivation in parent rats from a TMAH developmental and reproductive toxicology (DART) screening study, was chosen as the point of departure (POD). The POD was then divided by uncertainty factors (UFs) totaling 1,000 (interspecies variation: 10, intraspecies variation: 10, short study duration: 10), resulting in an oral HAV of 0.001 mg/kg/day for TMAH. Due to a lack of hazard data for humans and animals via inhalation, an HAV for the inhalation route was not established.