P-045:
Complete genome analysis of a nonylphenol-degrading bacterium Sphingobium cloacae JCM10874T
○Ootsuka Mina
1, Yoshioka-Ikunaga Yoko
1, Nishizawa Tomoyasu
2, Hasegawa Morifumi
2, Kurusu Yasurou
2, Ohta Hiroyuki
2
1United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, 2Ibaraki University College of Agriculture
s159293t@st.go.tuat.ac.jp
Alkylphenols such as nonylphenol (NP) and octylphenol (OP) are known to be endocrine disrupting agents and found as degradation products of industrial detergents, NP- and OP-polyethoxylates, in the natural environment. In an early work by Fuji et al., a bacterium (JCM10874T) able to degrade NP was isolated from wastewater of a sewage treatment plant in Tokyo and identified as a novel species, Sphingomonas cloacae, later reclassified as Sphingobium cloacae, in the class Alphaproteobacteria. In this study, we analyzed the complete genome sequence of strain JCM10874T to characterize the NP degradation genes. Genomic DNA of the strain JCM10874T was sequenced by the PacBio RS II system and annotated using the MiGap, RAST and BLASTP programs. Strain JCM10874T consists of 3,767,292-bp one circular chromosome, SCLO1 (coverage of 322-folds) with 64.6% G+C content and contains 3,302 coding sequences (CDSs), 6 rRNA operons and 50 tRNA genes, and five circular plasmids, pSCLO2 (375,493bp, 64.9% G+C, 334 CDSs, coverage of 301-folds), pSCLO3 (151,712bp, 62.8% G+C, 137 CDSs, coverage of 340-folds), pSCLO4 (108,910bp, 63.7% G+C, 92 CDSs, coverage of 225-folds), pSCLO5 (57,701bp, 63.5% G+C, 53 CDSs, coverage of 85-folds), pSCLO7 (33,768bp, 62.9% G+C, 33 CDSs, coverage of 32-folds), and a linear plasmid, pSCLO6 (52,690bp, 62.4% G+C, 51 CDSs, coverage of 99-folds). From the genomic analysis, the strain was found to possess the genes encoding octylphenol 4-monooxygenase (opdA), nonylphenol monooxygenase (nmoA) and hydroquinone degradation gene cluster. From these genetic analyses, it can be concluded that both OP and NP are transformed to hydroquinone (HQ) and 1,2,4-benzenetriol by opdA and nmoA, thereafter HQ and 1,2,4-benzenetriol are degraded by hydroquinone degradation enzymes. Further analyses are now in progress to compare the degradation genes of another related OP- and NP-degrading bacterium Sphingobium amiense strain YTT.